Introduction to Bioinformatics / Fall 2025

Updates

New Lecture is up: Wrapup [slides]
New Assignment released: [Assignment #6: Picomap]
New Lecture is up: Gene expression estimation from RNA-seq [slides] [supplement_slides]
New Assignment released: [Assignment #5: Pairwise Alignment]
New Lecture is up: Efficient representation of the de Bruijn graph [slides]
New Lecture is up: The de Bruijn Graph [slides]
New Assignment released: [Assignment #4: FM-index construction and search]

Course Description

Algorithms and Data Structures for Modern Bioinformatcs

Please take a moment to visit Piazza and make sure that you are properly registered in Gradescope.

Instructors

Rob Patro

Teaching Assistants

Rachel Parsons